PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8756989g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 258aa    MW: 29011.7 Da    PI: 8.0998
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8756989g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC136.76.8e-43701714102
            NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 
                        w++q   +e+a + +nh++Plarikki+k+ e+v+misaeaPv+++kace+fi elt r+w+++ e+krrtl+k+diaaa++  d+fdfl+d
  MA_8756989g0010  70 ICWANQmqgVEQAVECRNHSFPLARIKKIMKSGEHVRMISAEAPVVFAKACEMFINELTARAWNRTGETKRRTLQKNDIAAAINGIDTFDFLID 163
                      579999666789999******************************************************************************* PP

            NF-YC  95 ivprdelk 102
                      i prdelk
  MA_8756989g0010 164 ILPRDELK 171
                      *****875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.7E-2771161IPR009072Histone-fold
PfamPF008083.9E-2289152IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.8E-3490167IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDKQSSRQHM PKQYYGETLY QTPQILPTID HGTFQQPPTS SYTHAPALSL SAHYNQLAYY  60
HQKQQQEVEI CWANQMQGVE QAVECRNHSF PLARIKKIMK SGEHVRMISA EAPVVFAKAC  120
EMFINELTAR AWNRTGETKR RTLQKNDIAA AINGIDTFDF LIDILPRDEL KEDQLINLGT  180
PASALSVGSS SSNAGGANSF PYYYLPNQQH SGPHGTIAVK LMDPAIYMQQ PRSSLPYMQN  240
MLQRGYMHTD KSSSPNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_B4e-33841671194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C4e-33841671194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145RRTLQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010746.18e-61PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8LCG73e-53NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA9NTJ81e-102A9NTJ8_PICSI; Putative uncharacterized protein
STRINGVIT_14s0128g00250.t012e-58(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.29e-52nuclear factor Y, subunit C2